Base de dados : LILACS
Pesquisa : G02.111.080 [Categoria DeCS]
Referências encontradas : 16 [refinar]
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  1 / 16 LILACS  
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Id: biblio-839366
Autor: Wang, Jianfeng; Chen, Yan; Wu, Liyan; Chen, Yu; Xu, Liqun.
Título: Draft genome sequence of a multidrug-resistant beta-lactamase OXA-357-producing Acinetobacter pittii ST865 clinical isolate from China
Fonte: Braz. j. microbiol;48(2):196-197, April.-June 2017.
Idioma: en.
Resumo: Abstract Worldwide increasing emergence of carbapenem-resistant Acinetobacter spp. has rendered the limited availability of effective antimicrobial agents and has become a major public health concern. In this study, we report the draft genome sequence of A. pittii TCM156, a multidrug-resistant isolate that harbored the blaOXA-357 gene. The genome sequence was further analyzed by various bioinformatics methods. The genome size was estimated to be 3,807,313 bp with 3508 predicted coding regions and G + C content is 38.7%. These findings have raised awareness of the possible emergence of OXA-type enzyme-producing A. pittii isolate in China.
Descritores: Acinetobacter/genética
beta-Lactamases/metabolismo
Infecções por Acinetobacter/microbiologia
DNA Bacteriano/química
Genoma Bacteriano
Análise de Sequência de DNA
Farmacorresistência Bacteriana Múltipla
-Composição de Bases
Acinetobacter/isolamento & purificação
Acinetobacter/efeitos dos fármacos
Acinetobacter/enzimologia
DNA Bacteriano/genética
China
Responsável: BR1.1 - BIREME


  2 / 16 LILACS  
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Id: biblio-839392
Autor: Hong, Sung-Jun; Park, Gun-Seok; Khan, Abdur Rahim; Jung, Byung Kwon; Shin, Jae-Ho.
Título: Draft genome sequence of a caprolactam degrader bacterium: Pseudomonas taiwanensis strain SJ9
Fonte: Braz. j. microbiol;48(2):187-188, April.-June 2017.
Idioma: en.
Resumo: Abstract Pseudomonas taiwanensis strain SJ9 is a caprolactam degrader, isolated from industrial wastewater in South Korea and considered to have the potential for caprolactam bioremediation. The genome of this strain is approximately 6.2 Mb (G + C content, 61.75%) with 6,010 protein-coding sequences (CDS), of which 46% are assigned to recognized functional genes. This draft genome of strain SJ9 will provide insights into the genetic basis of its caprolactam-degradation ability.
Descritores: Pseudomonas/genética
Pseudomonas/metabolismo
DNA Bacteriano/genética
DNA Bacteriano/química
Caprolactama/metabolismo
Genoma Bacteriano
Análise de Sequência de DNA
-Pseudomonas/isolamento & purificação
Composição de Bases
Microbiologia da Água
Biotransformação
Fases de Leitura Aberta
Anotação de Sequência Molecular
Resíduos Industriais
Coreia (Geográfico)
Responsável: BR1.1 - BIREME


  3 / 16 LILACS  
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Id: biblio-839388
Autor: Sharma, Vikas; Lin, Johnson.
Título: Draft genome sequence of phenol degrading Acinetobacter sp. Strain V2, isolated from oil contaminated soil
Fonte: Braz. j. microbiol;48(2):189-190, April.-June 2017. tab.
Idioma: en.
Resumo: Abstract We report here the draft genome sequence of Acinetobacter sp. Strain V2 isolated from the oil contaminated soil collected from ENGEN, Amanzimtoti, South Africa. Degradation of phenolic compounds such as phenol, toluene, aniline etc. at 400 ppm in 24 h and oil degrading capability makes this organism an efficient multifunctional bioremediator. Genome sequencing of Acinetobacter spp. V2 was carried out on Illumina HiSeq 2000 platform (performed by the Beijing Genomics Institute [BGI], Shenzhen, China). The data obtained revealed 643 contigs with genome size of 4.0 Mb and G + C content of 38.59%.
Descritores: Acinetobacter/genética
Acinetobacter/metabolismo
DNA Bacteriano/genética
DNA Bacteriano/química
Óleos/metabolismo
Genoma Bacteriano
Análise de Sequência de DNA
-Fenóis/metabolismo
Microbiologia do Solo
Poluentes do Solo/metabolismo
África do Sul
Composição de Bases
Acinetobacter/isolamento & purificação
Biotransformação
Responsável: BR1.1 - BIREME


  4 / 16 LILACS  
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Id: biblio-889240
Autor: Ser, Hooi-Leng; Tan, Wen-Si; Mutalib, Nurul-Syakima Ab; Yin, Wai-Fong; Chan, Kok-Gan; Goh, Bey-Hing; Lee, Learn-Han.
Título: Genome sequence of Streptomyces gilvigriseus MUSC 26T isolated from mangrove forest
Fonte: Braz. j. microbiol;49(2):207-209, Apr.-June 2018. tab.
Idioma: en.
Projeto: PVC Award Grant; . Biotek Abadi; . MOSTI eScience funds; . UM-MOHE HIR Nature Microbiome.
Resumo: Abstract Streptomycetes remain as one of the important sources for bioactive products. Isolated from the mangrove forest, Streptomyces gilvigriseus MUSC 26T was previously characterised as a novel streptomycete. The high quality draft genome of MUSC 26T contained 5,213,277 bp with G + C content of 73.0%. Through genome mining, several gene clusters associated with secondary metabolites production were revealed in the genome of MUSC 26T. These findings call for further investigations into the potential exploitation of the strain for production of pharmaceutically important compounds.
Descritores: Streptomyces/genética
Genoma Bacteriano
Microbiologia Ambiental
-Streptomyces/isolamento & purificação
Composição de Bases
Produtos Biológicos/metabolismo
Análise de Sequência de DNA
Biologia Computacional
Zonas Úmidas
Redes e Vias Metabólicas/genética
Metabolismo Secundário
Responsável: BR1.1 - BIREME


  5 / 16 LILACS  
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Id: biblio-889216
Autor: Yang, Xue-Jing; Wang, Sai; Cao, Jun-Min; Hou, Jia-Hui.
Título: Complete genome sequence of human pathogen Kosakonia cowanii type strain 888-76T
Fonte: Braz. j. microbiol;49(1):16-17, Jan.-Mar. 2018.
Idioma: en.
Projeto: Science and Technology Program of Zhejiang Province; . Zhejiang Provincial Medical and Health Science.
Resumo: ABSTRACT Kosakonia cowanii type strain 888-76T is a human pathogen which was originally isolated from blood as NIH group 42. In this study, we report the complete genome sequence of K. cowanii 888-76T. 888-76T has 1 chromosome and 2 plasmids with a total genome size of 4,857,567 bp and C+G 56.15%. This genome sequence will not only help us to understand the virulence features of K. cowanii 888-76T but also provide us the useful information for the study of evolution of Kosakonia genus.
Descritores: Genoma Bacteriano
Enterobacteriaceae/isolamento & purificação
Enterobacteriaceae/genética
Infecções por Enterobacteriaceae/microbiologia
-Filogenia
Plasmídeos/genética
Composição de Bases
DNA Bacteriano/genética
Dados de Sequência Molecular
Sequência de Bases
Enterobacteriaceae/classificação
Limites: Seres Humanos
Responsável: BR1.1 - BIREME


  6 / 16 LILACS  
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Id: biblio-889201
Autor: Siqueira, Franciele Maboni; Cibulski, Samuel Paulo; Mayer, Fabiana Quoos; Driemeier, David; Pavarini, Saulo Petinatti; Vargas, Agueda Palmira Castagna de.
Título: Genome sequencing of two Bacillus anthracis strains: a virulent strain and a vaccinal strain
Fonte: Braz. j. microbiol;49(1):18-19, Jan.-Mar. 2018.
Idioma: en.
Projeto: Universidade Federal de Santa Maria.
Resumo: ABSTRACT Bacillus anthracis strain SPV842_15 was isolated from bovine fetus, while B. anthracis strain Brazilian vaccinal was recovered from a commercial vaccine. We report here the genome sequences of both strains. The SPV842_15 genome is composed of a single circular chromosome with a length of 5,228,664 base pairs, and comprises 5911 coding sequences. In turn, the Brazilian vaccinal genome remains in 201 contigs with 5733 coding sequences. Both genomes have an overall C + G content of 35.4%, and 11 genes encoding the ribosomal RNAs (rRNAs) 5S, 16S and 23S. Only the plasmid pX01 sequence, which carries genes for toxins synthesis, was detected and completely assembled for both strains. These plasmids have a length of 181,684 base pairs and a C + G content of 32.5%. These genomic data generate insights about vaccinal B. anthracis virulence.
Descritores: Bacillus anthracis/isolamento & purificação
Bacillus anthracis/genética
Vacinas Bacterianas/genética
Doenças dos Bovinos/microbiologia
Genoma Bacteriano
-Filogenia
Plasmídeos/genética
Bacillus anthracis/classificação
Composição de Bases
DNA Bacteriano/genética
Dados de Sequência Molecular
Vacinas Bacterianas/isolamento & purificação
Sequência de Bases
Limites: Animais
Bovinos
Responsável: BR1.1 - BIREME


  7 / 16 LILACS  
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Id: biblio-889198
Autor: Thevarajoo, Suganthi; Selvaratnam, Chitra; Chan, Kok-Gan; Goh, Kian Mau; Chong, Chun Shiong.
Título: Draft genome sequence of Vitellibacter aquimaris D-24T isolated from seawater
Fonte: Braz. j. microbiol;49(1):10-12, Jan.-Mar. 2018. tab.
Idioma: en.
Projeto: Ministry of Education Malaysia; . Universiti Teknologi Malaysia RU; . University of Malaya High Impact.
Resumo: ABSTRACT Vitellibacter aquimaris D-24T (=KCTC 42708T = DSM 101732T), a halophilic marine bacterium, was isolated from seawater collected from Desaru beach, Malaysia. Here, we present the draft genome sequence of D-24T with a genome size of approximately 3.1 Mbp and G + C content of 39.93%. The genome of D-24T contains genes involved in reducing a potent greenhouse gas (N2O) in the environment and the degradation of proteinaceous compounds. Genome availability will provide insights into potential biotechnological and environmental applications of this bacterium.
Descritores: Água do Mar/microbiologia
Genoma Bacteriano
Flavobacteriaceae/genética
-Filogenia
Composição de Bases
DNA Bacteriano/genética
Dados de Sequência Molecular
Sequência de Bases
Flavobacteriaceae/isolamento & purificação
Flavobacteriaceae/classificação
Malásia
Responsável: BR1.1 - BIREME


  8 / 16 LILACS  
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Id: biblio-889197
Autor: Skraban, Jure; Kyrpides, Nikos C; Shapiro, Nicole; Whitman, William B; Trcek, Janja.
Título: Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge
Fonte: Braz. j. microbiol;49(1):5-6, Jan.-Mar. 2018.
Idioma: en.
Projeto: Office of Science of the U.S. Department of Energy.
Resumo: ABSTRACT The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725 bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-β-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species.
Descritores: Esgotos/microbiologia
Genoma Bacteriano
Chryseobacterium/genética
-Penicilinas/farmacologia
Filogenia
Esgotos/química
Composição de Bases
DNA Bacteriano/genética
Dados de Sequência Molecular
Sequência de Bases
Testes de Sensibilidade Microbiana
Carbapenêmicos/farmacologia
Chryseobacterium/isolamento & purificação
Chryseobacterium/classificação
Chryseobacterium/efeitos dos fármacos
Antibacterianos/farmacologia
Responsável: BR1.1 - BIREME


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Id: biblio-889194
Autor: Ser, Hooi-Leng; Tan, Wen-Si; Ab Mutalib, Nurul-Syakima; Yin, Wai-Fong; Chan, Kok-Gan; Goh, Bey-Hing; Lee, Learn-Han.
Título: Genome sequence of Streptomyces mangrovisoli MUSC 149T isolated from intertidal sediments
Fonte: Braz. j. microbiol;49(1):13-15, Jan.-Mar. 2018. tab, graf.
Idioma: en.
Projeto: PVC; . External Industry; . Fundamental Research Grant Scheme; . eScience; . University of Malaya; . PPP.
Resumo: ABSTRACT As the largest genus in Actinobacteria family, Streptomyces species have the ability to synthesize numerous compounds of diverse structures with bioactivities. Streptomyces mangrovisoli MUSC 149T was previously isolated as a novel streptomycete from mangrove forest in east coast of Peninsular Malaysia. The high quality draft genome of MUSC 149T comprises 9,165,825 bp with G + C content of 72.5%. Through bioinformatics analysis, 21 gene clusters identified in the genome were associated with the production of bioactive secondary metabolites. The presence of these biosynthetic gene clusters in MUSC 149T suggests the potential exploitation of the strain for production of medically important compounds.
Descritores: Streptomyces/isolamento & purificação
Genoma Bacteriano
Sedimentos Geológicos/microbiologia
-Filogenia
Streptomyces/classificação
Streptomyces/genética
Proteínas de Bactérias/genética
Proteínas de Bactérias/metabolismo
Composição de Bases
DNA Bacteriano/genética
Dados de Sequência Molecular
Sequência de Bases
Malásia
Responsável: BR1.1 - BIREME


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Id: biblio-889213
Autor: Braga, Lívia Fabiana; Oliveira, Fênix Araújo de; Couto, Eva Aparecida Prado do; Santos, Karina Freire d'Eça Nogueira; Ferreira, Enderson Petrônio de Brito; Martin-Didonet, Claudia Cristina Garcia.
Título: Polyphasic characterization of bacteria obtained from upland rice cultivated in Cerrado soil
Fonte: Braz. j. microbiol;49(1):20-28, Jan.-Mar. 2018. tab, graf.
Idioma: en.
Resumo: ABSTRACT This work aimed to characterize 20 isolates obtained from upland rice plants, based on phenotypic (morphology, enzymatic activity, inorganic phosphate solubilization, carbon source use, antagonism), genotypic assays (16S rRNA sequencing) and plant growth promotion. Results showed a great morphological, metabolic and genetic variability among bacterial isolates. All isolates showed positive activity for catalase and protease enzymes and, 90% of the isolates showed positive activity for amylase, catalase and, nitrogenase. All isolates were able to metabolize sucrose and malic acid in contrast with mannitol, which was metabolized only by one isolate. For the other carbon sources, we observed a great variability in its use by the isolates. Most isolates showed antibiosis against Rhizoctonia solani (75%) and Sclerotinia sclerotiorum (55%) and, 50% of them showed antibiosis against both pathogens. Six isolates showed simultaneous ability of antibiosis, inorganic phosphate solubilization and protease activity. Based on phylogenetic analysis of the 16S rRNA gene all the isolates belong to Bacillus genus. Under greenhouse conditions, two isolates (S4 and S22) improved to about 24%, 25%, 30% and 31% the Total N, leaf area, shoot dry weight and root dry weight, respectively, of rice plants, indicating that they should be tested for this ability under field conditions.
Descritores: Bactérias/isolamento & purificação
Chryseobacterium/genética
Oryza/crescimento & desenvolvimento
Microbiologia do Solo
-Antibiose
Fenômenos Fisiológicos Bacterianos
Bactérias/classificação
Bactérias/genética
Composição de Bases
Sequência de Bases
Chryseobacterium/classificação
Chryseobacterium/efeitos dos fármacos
Chryseobacterium/isolamento & purificação
DNA Bacteriano/genética
Dados de Sequência Molecular
Oryza/microbiologia
Filogenia
Responsável: BR1.1 - BIREME



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