Base de dados : MEDLINE
Pesquisa : B04.280.092 [Categoria DeCS]
Referências encontradas : 22 [refinar]
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  1 / 22 MEDLINE  
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[PMID]:25855242
[Au] Autor:Villacreses J; Rojas-Herrera M; Sánchez C; Hewstone N; Undurraga SF; Alzate JF; Manque P; Maracaja-Coutinho V; Polanco V
[Ad] Endereço:Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago 8580000, Chile. javier.villacreses@mayor.cl.
[Ti] Título:Deep sequencing reveals the complete genome and evidence for transcriptional activity of the first virus-like sequences identified in Aristotelia chilensis (Maqui Berry).
[So] Source:Viruses;7(4):1685-99, 2015 Apr 03.
[Is] ISSN:1999-4915
[Cp] País de publicação:Switzerland
[La] Idioma:eng
[Ab] Resumo:Here, we report the genome sequence and evidence for transcriptional activity of a virus-like element in the native Chilean berry tree Aristotelia chilensis. We propose to name the endogenous sequence as Aristotelia chilensis Virus 1 (AcV1). High-throughput sequencing of the genome of this tree uncovered an endogenous viral element, with a size of 7122 bp, corresponding to the complete genome of AcV1. Its sequence contains three open reading frames (ORFs): ORFs 1 and 2 shares 66%-73% amino acid similarity with members of the Caulimoviridae virus family, especially the Petunia vein clearing virus (PVCV), Petuvirus genus. ORF1 encodes a movement protein (MP); ORF2 a Reverse Transcriptase (RT) and a Ribonuclease H (RNase H) domain; and ORF3 showed no amino acid sequence similarity with any other known virus proteins. Analogous to other known endogenous pararetrovirus sequences (EPRVs), AcV1 is integrated in the genome of Maqui Berry and showed low viral transcriptional activity, which was detected by deep sequencing technology (DNA and RNA-seq). Phylogenetic analysis of AcV1 and other pararetroviruses revealed a closer resemblance with Petuvirus. Overall, our data suggests that AcV1 could be a new member of Caulimoviridae family, genus Petuvirus, and the first evidence of this kind of virus in a fruit plant.
[Mh] Termos MeSH primário: Caulimoviridae/classificação
Caulimoviridae/isolamento & purificação
Elaeocarpaceae/virologia
Genoma Viral
Sequenciamento de Nucleotídeos em Larga Escala
[Mh] Termos MeSH secundário: Caulimoviridae/genética
Análise por Conglomerados
Dados de Sequência Molecular
Fases de Leitura Aberta
Filogenia
Proteínas do Movimento Viral em Plantas/genética
DNA Polimerase Dirigida por RNA/genética
Ribonuclease H/genética
Análise de Sequência de DNA
Homologia de Sequência de Aminoácidos
Transcrição Genética
Integração Viral
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T
[Nm] Nome de substância:
0 (Plant Viral Movement Proteins); EC 2.7.7.49 (RNA-Directed DNA Polymerase); EC 3.1.26.4 (Ribonuclease H)
[Em] Mês de entrada:1512
[Cu] Atualização por classe:170220
[Lr] Data última revisão:
170220
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:150410
[St] Status:MEDLINE
[do] DOI:10.3390/v7041685


  2 / 22 MEDLINE  
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[PMID]:25281563
[Au] Autor:Zhang Y; Angel CA; Valdes S; Qiu W; Schoelz JE
[Ad] Endereço:Division of Plant Sciences, University of Missouri-Columbia, Columbia, MO 65211, USA.
[Ti] Título:Characterization of the promoter of Grapevine vein clearing virus.
[So] Source:J Gen Virol;96(Pt 1):165-9, 2015 Jan.
[Is] ISSN:1465-2099
[Cp] País de publicação:England
[La] Idioma:eng
[Ab] Resumo:Grapevine vein clearing virus (GVCV) is a recently discovered DNA virus in grapevine that is closely associated with the grapevine vein clearing syndrome observed in vineyards in Missouri and surrounding states. The genome sequence of GVCV indicates that it belongs to the genus Badnavirus in the family Caulimoviridae. To identify the GVCV promoter, we cloned portions of the GVCV large intergenic region in front of a GFP gene present in an Agrobacterium tumefaciens binary vector. GFP expression was assessed by ELISA 3 days after agroinfiltration of Nicotiana benthamiana leaves. We found that the GVCV DNA segment between nts 7332 and 7672 directed expression of GFP and this expression was stronger than expression using the Cauliflower mosaic virus 35S promoter. It was revealed by 5' and 3' RACE that transcription was initiated predominantly at nt 7571 and terminated at nt 7676.
[Mh] Termos MeSH primário: Caulimoviridae/genética
Vírus de DNA/genética
Doenças das Plantas/virologia
Regiões Promotoras Genéticas/genética
Vitis/virologia
[Mh] Termos MeSH secundário: Agrobacterium tumefaciens/virologia
Caulimovirus/genética
DNA Viral/genética
Missouri
Folhas de Planta/virologia
Tabaco/virologia
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, U.S. GOV'T, NON-P.H.S.
[Nm] Nome de substância:
0 (DNA, Viral)
[Em] Mês de entrada:1503
[Cu] Atualização por classe:141219
[Lr] Data última revisão:
141219
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:141005
[St] Status:MEDLINE
[do] DOI:10.1099/vir.0.069286-0


  3 / 22 MEDLINE  
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[PMID]:25461539
[Au] Autor:Chen S; Liu R; Koyanagi KO; Kishima Y
[Ad] Endereço:Laboratory of Plant Breeding, Research Faculty of Agriculture, Hokkaido University, Sapporo 060-8589, Japan.
[Ti] Título:Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation.
[So] Source:Virology;471-473:141-52, 2014 Dec.
[Is] ISSN:1096-0341
[Cp] País de publicação:United States
[La] Idioma:eng
[Ab] Resumo:Viral fossils in rice genomes are a best entity to understand ancient pararetrovirus activities through host plant history because of our advanced knowledge of the genomes and evolutionary history with rice and its related species. Here, we explored organization, geographic origins and genealogy of rice pararetroviruses, which were turned into endogenous rice tungro bacilliform virus-like (eRTBVL) sequences. About 300 eRTBVL sequences from three representative rice genomes were clearly classified into six families. Most of the endogenization events of the eRTBVLs were initiated before differentiation of the rice progenitor (> 160,000 years ago). We successfully followed the genealogy of old relic viruses during rice speciation, and inferred the geographical origins for these viruses. Possible virus genomic sequences were explained mostly by recombinations between different virus families. Interestingly, we discovered that only a few recombination events among the numerous occasions had determined the virus genealogy.
[Mh] Termos MeSH primário: Evolução Molecular
Especiação Genética
Genoma de Planta/genética
Oryza/genética
Vírus de Plantas/genética
[Mh] Termos MeSH secundário: Caulimoviridae/classificação
Caulimoviridae/genética
Hepadnaviridae/classificação
Hepadnaviridae/genética
Oryza/virologia
Filogenia
Vírus de Plantas/classificação
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T
[Em] Mês de entrada:1502
[Cu] Atualização por classe:151119
[Lr] Data última revisão:
151119
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:141203
[St] Status:MEDLINE


  4 / 22 MEDLINE  
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[PMID]:25381880
[Au] Autor:Geering AD; Maumus F; Copetti D; Choisne N; Zwickl DJ; Zytnicki M; McTaggart AR; Scalabrin S; Vezzulli S; Wing RA; Quesneville H; Teycheney PY
[Ad] Endereço:Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, GPO Box 267, Brisbane, Queensland 4001, Australia.
[Ti] Título:Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution.
[So] Source:Nat Commun;5:5269, 2014 Nov 10.
[Is] ISSN:2041-1723
[Cp] País de publicação:England
[La] Idioma:eng
[Ab] Resumo:The extent and importance of endogenous viral elements have been extensively described in animals but are much less well understood in plants. Here we describe a new genus of Caulimoviridae called 'Florendovirus', members of which have colonized the genomes of a large diversity of flowering plants, sometimes at very high copy numbers (>0.5% total genome content). The genome invasion of Oryza is dated to over 1.8 million years ago (MYA) but phylogeographic evidence points to an even older age of 20-34 MYA for this virus group. Some appear to have had a bipartite genome organization, a unique characteristic among viral retroelements. In Vitis vinifera, 9% of the endogenous florendovirus loci are located within introns and therefore may influence host gene expression. The frequent colocation of endogenous florendovirus loci with TA simple sequence repeats, which are associated with chromosome fragility, suggests sequence capture during repair of double-stranded DNA breaks.
[Mh] Termos MeSH primário: Caulimoviridae/genética
Evolução Molecular
Genoma de Planta/genética
Oryza/virologia
Filogenia
[Mh] Termos MeSH secundário: Dosagem de Genes/genética
Loci Gênicos/genética
Íntrons/genética
Repetições de Microssatélites/genética
Replicação Viral/genética
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T
[Em] Mês de entrada:1602
[Cu] Atualização por classe:170220
[Lr] Data última revisão:
170220
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:141111
[St] Status:MEDLINE
[do] DOI:10.1038/ncomms6269


  5 / 22 MEDLINE  
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[PMID]:24063990
[Au] Autor:Hohn T; Rothnie H
[Ad] Endereço:Basel University, Botanical Institute, Basel, Switzerland. Electronic address: hohn@fmi.ch.
[Ti] Título:Plant pararetroviruses: replication and expression.
[So] Source:Curr Opin Virol;3(6):621-8, 2013 Dec.
[Is] ISSN:1879-6265
[Cp] País de publicação:Netherlands
[La] Idioma:eng
[Ab] Resumo:True retroviruses are not known in plants; however, plant pararetroviruses (caulimoviridae) share many retroviral properties, replicating by transcription in the nucleus followed by reverse transcription in the cytoplasm. Pararetroviruses have circular DNA genomes that do not integrate into the host genome, and display several unique expression strategies. Typical of plant pararetroviral pregenomic RNA is a highly structured leader of about 600nt long that is bypassed by scanning ribosomes. Caulimoviruses and Soymoviruses have a further interesting translation mechanism: at least six of the seven open reading frames are translated via polycistronic translation mediated by a specific transactivator (TAV), which modifies the translation complex. TAV also forms large intracellular inclusion bodies, which are the site of translation and virus assembly.
[Mh] Termos MeSH primário: Caulimoviridae/fisiologia
Regulação Viral da Expressão Gênica
Interações Hospedeiro-Patógeno
Plantas/virologia
Replicação Viral
[Mh] Termos MeSH secundário: Replicação do DNA
DNA Viral/metabolismo
Corpos de Inclusão Viral
Biossíntese de Proteínas
Transcrição Reversa
Transcrição Genética
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T; REVIEW
[Nm] Nome de substância:
0 (DNA, Viral)
[Em] Mês de entrada:1407
[Cu] Atualização por classe:160520
[Lr] Data última revisão:
160520
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:130926
[St] Status:MEDLINE


  6 / 22 MEDLINE  
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[PMID]:24035682
[Au] Autor:Chabannes M; Iskra-Caruana ML
[Ad] Endereço:CIRAD, UMR BGPI, F-34098 Montpellier, France. Electronic address: matthieu.chabannes@cirad.fr.
[Ti] Título:Endogenous pararetroviruses--a reservoir of virus infection in plants.
[So] Source:Curr Opin Virol;3(6):615-20, 2013 Dec.
[Is] ISSN:1879-6265
[Cp] País de publicação:Netherlands
[La] Idioma:eng
[Ab] Resumo:Endogenous pararetrovirus sequences (EPRV) belonging to the plant virus family Caulimoviridae have been discovered in the genomes of a wide range of Angiosperms. Although knowledge of EPRVs in plants is still in its infancy, it has been shown clearly in three different plant-virus pathosystems that these integrations are capable of generating functional circular viral genomes, and can thus trigger systemic infection. Here, we recapitulate information gathered over the last 15 years on how EPRVs contribute to virus replication in plants. We first present recent advances in our understanding of the molecular mechanisms involved in the transition from integrated to circular viral forms before addressing how EPRVs are controlled in planta.
[Mh] Termos MeSH primário: Caulimoviridae/fisiologia
Retrovirus Endógenos/fisiologia
Magnoliopsida/virologia
Doenças das Plantas/virologia
Replicação Viral
[Mh] Termos MeSH secundário: Interações Hospedeiro-Patógeno
Ativação Viral
Integração Viral
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T; REVIEW
[Em] Mês de entrada:1407
[Cu] Atualização por classe:171116
[Lr] Data última revisão:
171116
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:130917
[St] Status:MEDLINE


  7 / 22 MEDLINE  
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[PMID]:23887650
[Au] Autor:Pooggin MM
[Ad] Endereço:University of Basel, Department of Environmental Sciences, Botany, Schönbeinstrasse 6, Basel 4056, Switzerland. mikhail.pooggin@unibas.ch
[Ti] Título:How can plant DNA viruses evade siRNA-directed DNA methylation and silencing?
[So] Source:Int J Mol Sci;14(8):15233-59, 2013 Jul 24.
[Is] ISSN:1422-0067
[Cp] País de publicação:Switzerland
[La] Idioma:eng
[Ab] Resumo:Plants infected with DNA viruses produce massive quantities of virus-derived, 24-nucleotide short interfering RNAs (siRNAs), which can potentially direct viral DNA methylation and transcriptional silencing. However, growing evidence indicates that the circular double-stranded DNA accumulating in the nucleus for Pol II-mediated transcription of viral genes is not methylated. Hence, DNA viruses most likely evade or suppress RNA-directed DNA methylation. This review describes the specialized mechanisms of replication and silencing evasion evolved by geminiviruses and pararetoviruses, which rescue viral DNA from repressive methylation and interfere with transcriptional and post-transcriptional silencing of viral genes.
[Mh] Termos MeSH primário: Caulimoviridae/genética
Metilação de DNA/genética
Geminiviridae/genética
Doenças das Plantas/imunologia
RNA Interferente Pequeno/metabolismo
[Mh] Termos MeSH secundário: Caulimoviridae/metabolismo
Geminiviridae/metabolismo
Nanoviridae/genética
Nanoviridae/metabolismo
Doenças das Plantas/genética
Doenças das Plantas/virologia
Plantas/genética
Plantas/imunologia
Interferência de RNA/imunologia
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T; REVIEW
[Nm] Nome de substância:
0 (RNA, Small Interfering)
[Em] Mês de entrada:1404
[Cu] Atualização por classe:170220
[Lr] Data última revisão:
170220
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:130727
[St] Status:MEDLINE
[do] DOI:10.3390/ijms140815233


  8 / 22 MEDLINE  
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[PMID]:23178971
[Au] Autor:Mollov D; Lockhart B; Zlesak DC; Olszewski N
[Ad] Endereço:Department of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA. dmollov@umn.edu
[Ti] Título:Complete nucleotide sequence of rose yellow vein virus, a member of the family Caulimoviridae having a novel genome organization.
[So] Source:Arch Virol;158(4):877-80, 2013 Apr.
[Is] ISSN:1432-8798
[Cp] País de publicação:Austria
[La] Idioma:eng
[Ab] Resumo:This report describes the complete nucleotide sequence and genome organization of rose yellow vein virus (RYVV), a proposed new member of the family Caulimoviridae. The RYVV genome is 9314 bp in size and contains eight open reading frames (ORFs). ORFs 1, 2, and 3 have 22-38 % amino acid sequence similarity to known members of the family Caulimoviridae. The remaining ORFs have no significant amino acid sequence similarity to known viruses. Based on differences in its genome organization, its low sequence similarity to known members of the family Caulimoviridae, and the results of phylogenetic analysis, RYVV appears to be a distinct new member of this family.
[Mh] Termos MeSH primário: Caulimoviridae/genética
Genoma Viral
[Mh] Termos MeSH secundário: Sequência de Bases
Caulimoviridae/classificação
Clonagem Molecular
Regulação Viral da Expressão Gênica/fisiologia
Dados de Sequência Molecular
Filogenia
Rosa
Proteínas Virais/genética
Proteínas Virais/metabolismo
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T
[Nm] Nome de substância:
0 (Viral Proteins)
[Em] Mês de entrada:1305
[Cu] Atualização por classe:130405
[Lr] Data última revisão:
130405
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:121127
[St] Status:MEDLINE
[do] DOI:10.1007/s00705-012-1547-9


  9 / 22 MEDLINE  
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[PMID]:22903235
[Au] Autor:Singh K; Talla A; Qiu W
[Ad] Endereço:Center for Grapevine Biotechnology, William H. Darr School of Agriculture, Missouri State University, Mountain Grove, MO 65711, USA. kashmir123@gmail.com
[Ti] Título:Small RNA profiling of virus-infected grapevines: evidences for virus infection-associated and variety-specific miRNAs.
[So] Source:Funct Integr Genomics;12(4):659-69, 2012 Nov.
[Is] ISSN:1438-7948
[Cp] País de publicação:Germany
[La] Idioma:eng
[Ab] Resumo:Grapevine is one of the economically and culturally important perennial fruit crops. More than 60 viruses infect grapevines and adversely affect their growth and development. Latent infection of most viruses in grapevines leads to chronic modulation of gene expression at transcriptional and post-transcriptional levels. Plant small RNAs (sRNAs) consist of microRNA (miRNA) and small interfering RNA (siRNA). miRNAs are expressed from the plant genome while most siRNAs are derived from double-stranded RNA molecules which are intermediates during virus replication. In a previous study, we constructed four cDNA libraries of sRNAs that were enriched from three virus-infected grapevines and one virus-free grapevine. Majority of siRNAs align most closely with the genomes of DNA viruses in the genus Badnavirus, family Caulimoviridae that led to the discovery of a new Grapevine vein clearing virus in grapevines. In this study, we conducted a comprehensive analysis of miRNAs in the four cDNA libraries and identified novel and stress-related miRNAs. The results indicated that miRNA abundance was influenced by virus infection. A total of 54 new miRNAs were identified and characterized, six of which, VITIS-MIR17, 18, 19, 20, 21, and 22, were detected only in virus-infected samples. One target of VITIS-MIR18 is the gene coding a non-apical meristem protein (GSVIVT00035370001), a transcription factor in the regulation of plant development and stress responses. Among the virus infection-induced known miRNAs, miRNA168 and miRNA3623 likely regulate grapevine's defense response, miRNA319 and miRNA395 modulate the expression of genes that are involved in nutrient metabolisms while miRNA396 plays a role in the regulation of cell division and cell cycle. The abiotic stress-induced miR169 and mi398 were negatively regulated by virus infection in grapevines. In addition, variety-specific miRNAs were discovered and compiled. The newly discovered miRNAs expand the miRNA profiles in the Vitis species. The characteristics of variety-specific and virus infection-associated miRNAs help understand the biology underlying the development and defense response of grapevines.
[Mh] Termos MeSH primário: Regulação da Expressão Gênica de Plantas
MicroRNAs/genética
Doenças das Plantas/virologia
RNA de Plantas/genética
RNA Interferente Pequeno/genética
Vitis/genética
[Mh] Termos MeSH secundário: Caulimoviridae/patogenicidade
Ciclo Celular
MicroRNAs/metabolismo
Doenças das Plantas/genética
Proteínas de Plantas/genética
Proteínas de Plantas/metabolismo
RNA de Plantas/metabolismo
RNA Interferente Pequeno/metabolismo
Estresse Fisiológico
Fatores de Transcrição/metabolismo
Transcriptoma
Vitis/metabolismo
Vitis/virologia
[Pt] Tipo de publicação:JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T
[Nm] Nome de substância:
0 (MicroRNAs); 0 (Plant Proteins); 0 (RNA, Plant); 0 (RNA, Small Interfering); 0 (Transcription Factors)
[Em] Mês de entrada:1304
[Cu] Atualização por classe:171013
[Lr] Data última revisão:
171013
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:120821
[St] Status:MEDLINE
[do] DOI:10.1007/s10142-012-0292-1


  10 / 22 MEDLINE  
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[PMID]:21987074
[Au] Autor:Kalinowska E; Paduch-Cichal E; Chodorska M
[Ad] Endereço:Faculty of Horticulture and Landscape Architecture, Department of Plant Pathology, Warsaw University of Life Sciences-SGGW, Nowoursynowska 159, 02-776 Warsaw, Poland. elzbieta_kalinowska@sggw.pl
[Ti] Título:Molecular characterization of Polish Blueberry red ringspot virus isolate.
[So] Source:Virus Genes;44(2):309-11, 2012 Apr.
[Is] ISSN:1572-994X
[Cp] País de publicação:United States
[La] Idioma:eng
[Ab] Resumo:In this study, we determined the complete sequence of the genomic DNA of a Polish isolate of Blueberry red ringspot virus (BRRSV24) and compared it with a Czech (Darrow 5), and the US isolates of the virus and those of other Caulimoviridae family. The genomic DNA of BRRSV24 consists of 8,265 nucleotides and encodes eight open reading frames (ORFs). The sequence homologies of the eight ORFs of BRRSV24 were from 95 to 98% in respect of Darrow 5 and from 91 to 98% in respect of the US isolates at the amino acid level. This high level of amino acid sequence identity within the coding regions among the Czech, the US and Polish BRRSV isolates is suggestive of their common origin.
[Mh] Termos MeSH primário: Mirtilos Azuis (Planta)/virologia
Caulimoviridae/genética
Caulimoviridae/isolamento & purificação
DNA Viral/química
DNA Viral/genética
Genoma Viral
Doenças das Plantas/virologia
[Mh] Termos MeSH secundário: Caulimoviridae/classificação
Análise por Conglomerados
Dados de Sequência Molecular
Fases de Leitura Aberta
Filogenia
Polônia
Análise de Sequência de DNA
Homologia de Sequência de Aminoácidos
[Pt] Tipo de publicação:COMPARATIVE STUDY; JOURNAL ARTICLE; RESEARCH SUPPORT, NON-U.S. GOV'T
[Nm] Nome de substância:
0 (DNA, Viral)
[Em] Mês de entrada:1206
[Cu] Atualização por classe:161125
[Lr] Data última revisão:
161125
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:111012
[St] Status:MEDLINE
[do] DOI:10.1007/s11262-011-0679-4



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