Base de dados : MEDLINE
Pesquisa : B04.715.810 [Categoria DeCS]
Referências encontradas : 185 [refinar]
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  1 / 185 MEDLINE  
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[PMID]:29214362
[Au] Autor:Zhuo T; Zhu LJ; Lu CC; Jiang CY; Chen ZY; Zhang G; Wang ZH; Jovel J; Han YH
[Ad] Endereço:College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
[Ti] Título:Complete nucleotide sequence of jasmine virus H, a new member of the family Tombusviridae.
[So] Source:Arch Virol;163(3):731-735, 2018 Mar.
[Is] ISSN:1432-8798
[Cp] País de publicação:Austria
[La] Idioma:eng
[Ab] Resumo:Jasmine virus H (JaVH) is a novel virus associated with symptoms of yellow mosaic on jasmine. The JaVH genome is 3,867 nt in length with five open reading frames (ORFs) encoding a 27-kDa protein (ORF 1), an 87-kDa replicase protein (ORF 2), two centrally located movement proteins (ORF 3 and 4), and a 37-kDa capsid protein (ORF 5). Based on genomic and phylogenetic analysis, JaVH is predicted to be a member of the genus Pelarspovirus in the family Tombusviridae.
[Mh] Termos MeSH primário: Genoma Viral
Jasminum/virologia
Filogenia
RNA Viral/genética
Tombusviridae/genética
[Mh] Termos MeSH secundário: Sequência de Bases
Proteínas do Capsídeo/genética
Sequenciamento de Nucleotídeos em Larga Escala
Fases de Leitura Aberta
RNA Replicase/genética
Tombusviridae/classificação
Tombusviridae/isolamento & purificação
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (Capsid Proteins); 0 (RNA, Viral); EC 2.7.7.48 (RNA Replicase)
[Em] Mês de entrada:1802
[Cu] Atualização por classe:180220
[Lr] Data última revisão:
180220
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:171208
[St] Status:MEDLINE
[do] DOI:10.1007/s00705-017-3663-z


  2 / 185 MEDLINE  
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[PMID]:28941403
[Au] Autor:Hyodo K; Nagai H; Okuno T
[Ad] Endereço:Institute of Plant Science and Resources, Okayama University, Kurashiki, Okayama 710-0046, Japan. Electronic address: khyodo@okayama-u.ac.jp.
[Ti] Título:Dual function of a cis-acting RNA element that acts as a replication enhancer and a translation repressor in a plant positive-stranded RNA virus.
[So] Source:Virology;512:74-82, 2017 Dec.
[Is] ISSN:1096-0341
[Cp] País de publicação:United States
[La] Idioma:eng
[Ab] Resumo:The genome of red clover necrotic mosaic virus is divided into two positive-stranded RNA molecules of RNA1 and RNA2, which have no 5' cap structure and no 3' poly(A) tail. Previously, we showed that any mutations in the cis-acting RNA replication elements of RNA2 abolished its cap-independent translational activity, suggesting a strong link between RNA replication and translation. Here, we investigated the functions of the 5' untranslated region (UTR) of RNA2 and revealed that the basal stem-structure (5'BS) predicted in the 5' UTR is essential for robust RNA replication. Interestingly, RNA2 mutants with substitution or deletion in the right side of the 5'BS showed strong translational activity, despite their impaired replication competency. Furthermore, nucleotide sequences other than the 5'BS of the 5' UTR were essential to facilitate the replication-associated translation. Overall, these cis-acting RNA elements seem to coordinately regulate the balance between RNA replication and replication-associated translation.
[Mh] Termos MeSH primário: Regulação Viral da Expressão Gênica/fisiologia
Tombusviridae/genética
Tombusviridae/fisiologia
Replicação Viral/fisiologia
[Mh] Termos MeSH secundário: Biossíntese de Proteínas
Protoplastos
RNA Viral/genética
Tabaco
Regiões não Traduzidas/genética
Regiões não Traduzidas/fisiologia
Proteínas Virais
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (RNA, Viral); 0 (Untranslated Regions); 0 (Viral Proteins)
[Em] Mês de entrada:1711
[Cu] Atualização por classe:171109
[Lr] Data última revisão:
171109
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170924
[St] Status:MEDLINE


  3 / 185 MEDLINE  
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[PMID]:28905257
[Au] Autor:Yoo RH; Lee SW; Lim S; Zhao F; Igori D; Baek D; Hong JS; Lee SH; Moon JS
[Ad] Endereço:Food Microbiology Division, Food Safety Evaluation Department, National Institute of Food and Drug Safety Evaluation, Cheongju, 28159, Republic of Korea.
[Ti] Título:Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum.
[So] Source:Arch Virol;162(12):3893-3897, 2017 Dec.
[Is] ISSN:1432-8798
[Cp] País de publicação:Austria
[La] Idioma:eng
[Ab] Resumo:Two novel viruses, isolated in Bonghwa, Republic of Korea, from an Ixeridium dentatum plant with yellowing mottle symptoms, have been provisionally named Ixeridium yellow mottle-associated virus 1 (IxYMaV-1) and Ixeridium yellow mottle-associated virus 2 (IxYMaV-2). IxYMaV-1 has a genome of 6,017 nucleotides sharing a 56.4% sequence identity with that of cucurbit aphid-borne yellows virus (genus Polerovirus). The IxYMaV-2 genome of 4,196 nucleotides has a sequence identity of less than 48.3% with e other species classified within the genus Umbravirus. Genome properties and phylogenetic analysis suggested that IxYMaV-1 and -2 are representative isolates of new species classifiable within the genus Polerovirus and Umbravirus, respectively.
[Mh] Termos MeSH primário: Asteraceae/virologia
Genoma Viral
Luteoviridae/classificação
Luteoviridae/isolamento & purificação
Tombusviridae/classificação
Tombusviridae/isolamento & purificação
[Mh] Termos MeSH secundário: Luteoviridae/genética
Filogenia
Doenças das Plantas/virologia
República da Coreia
Análise de Sequência de DNA
Homologia de Sequência
Tombusviridae/genética
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Em] Mês de entrada:1711
[Cu] Atualização por classe:171113
[Lr] Data última revisão:
171113
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170915
[St] Status:MEDLINE
[do] DOI:10.1007/s00705-017-3512-0


  4 / 185 MEDLINE  
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[PMID]:28750323
[Au] Autor:Gao F; Simon AE
[Ad] Endereço:Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
[Ti] Título:Differential use of 3'CITEs by the subgenomic RNA of Pea enation mosaic virus 2.
[So] Source:Virology;510:194-204, 2017 Oct.
[Is] ISSN:1096-0341
[Cp] País de publicação:United States
[La] Idioma:eng
[Ab] Resumo:The genomic RNA (gRNA) of Pea enation mosaic virus 2 (PEMV2) is the template for p33 and -1 frameshift product p94. The PEMV2 subgenomic RNA (sgRNA) encodes two overlapping ORFs, p26 and p27, which are required for movement and stability of the gRNA. Efficient translation of p33 requires two of three 3' proximal cap-independent translation enhancers (3'CITEs): the kl-TSS, which binds ribosomes and engages in a long-distance interaction with the 5'end; and the adjacent eIF4E-binding PTE. Unlike the gRNA, all three 3'CITEs were required for efficient translation of the sgRNA, which included the ribosome-binding 3'TSS. A hairpin in the 5' proximal coding region of p26/p27 supported translation by the 3'CITEs by engaging in a long-distance RNA:RNA interaction with the kl-TSS. These results strongly suggest that the 5' ends of PEMV2 gRNA and sgRNA connect with the 3'UTR through similar long-distance interactions while having different requirements for 3'CITEs.
[Mh] Termos MeSH primário: Biossíntese de Proteínas
RNA Viral/genética
RNA Viral/metabolismo
Sequências Reguladoras de Ácido Ribonucleico
Tombusviridae/fisiologia
Proteínas Virais/biossíntese
[Mh] Termos MeSH secundário: Conformação de Ácido Nucleico
Ervilhas/virologia
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (RNA, Viral); 0 (Regulatory Sequences, Ribonucleic Acid); 0 (Viral Proteins)
[Em] Mês de entrada:1708
[Cu] Atualização por classe:170829
[Lr] Data última revisão:
170829
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170728
[St] Status:MEDLINE


  5 / 185 MEDLINE  
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[PMID]:28646650
[Au] Autor:Tajima Y; Iwakawa HO; Hyodo K; Kaido M; Mise K; Okuno T
[Ad] Endereço:Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.
[Ti] Título:Requirement for eukaryotic translation initiation factors in cap-independent translation differs between bipartite genomic RNAs of red clover necrotic mosaic virus.
[So] Source:Virology;509:152-158, 2017 Sep.
[Is] ISSN:1096-0341
[Cp] País de publicação:United States
[La] Idioma:eng
[Ab] Resumo:The bipartite genomic RNAs of red clover necrotic mosaic virus (RCNMV) lack a 5' cap and a 3' poly(A) tail. RNA1 encodes viral replication proteins, and RNA2 encodes a movement protein (MP). These proteins are translated in a cap-independent manner. We previously identified two cis-acting RNA elements that cooperatively recruit eukaryotic translation initiation factor (eIF) complex eIF4F or eIFiso4F to RNA1. Such cis-acting RNA elements and host factors have not been identified in RNA2. Here we found that translation of RNA1 was significantly compromised in Arabidopsis thaliana carrying eif4f mutation. RNA1 replicated efficiently in eifiso4f1 mutants, suggesting vigorous translation of the replication proteins from RNA1 in the plants. In contrast, MP accumulation was decreased in eifiso4f1 mutants but not in eif4f mutants. Collectively, these results suggest that RCNMV uses different eIF complexes for translation of its bipartite genomic RNAs, which may contribute to fine-tuning viral gene expression during infection.
[Mh] Termos MeSH primário: Fatores de Iniciação de Peptídeos/metabolismo
Biossíntese de Proteínas
RNA Viral/metabolismo
Tombusviridae/genética
Tombusviridae/fisiologia
Replicação Viral
[Mh] Termos MeSH secundário: Arabidopsis
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (Peptide Initiation Factors); 0 (RNA, Viral)
[Em] Mês de entrada:1707
[Cu] Atualização por classe:170721
[Lr] Data última revisão:
170721
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170625
[St] Status:MEDLINE


  6 / 185 MEDLINE  
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[PMID]:28440187
[Au] Autor:Narayanan KB; Han SS
[Ad] Endereço:School of Chemical Engineering, Yeungnam University, 280 Daehak-Ro, Gyeongsan, Gyeongbuk 38541. Korea.
[Ti] Título:Genetic Modifications of Icosahedral Plant Virus-based Nanoparticles for Vaccine and Immunotherapy Applications.
[So] Source:Curr Protein Pept Sci;18(11):1141-1151, 2017 Aug 30.
[Is] ISSN:1875-5550
[Cp] País de publicação:Netherlands
[La] Idioma:eng
[Ab] Resumo:Vaccine development is one of the greatest achievements of modern medicine. Vaccines made of live-attenuated pathogens can revert to virulent live strains, which causes safety concerns. On the other hand, the use of purified antigenic components as subunit vaccines is safer, but less effective, as these components induce lower levels of protective immunity. Multiple copy presentation of an antigenic determinant in a well-ordered and well-defined orientation on a nanosized particle can mimic the natural host-pathogen surface interaction to provide antigen stability and immunogenicity similar to that of conventional vaccines with improved safety. The icosahedral symmetry of plant viral capsid based nanoparticles is highly ordered and their multivalent structured protein nanostructures facilitate genetic modifications that result in the display of heterologous epitopes or antigens attached to coat proteins. These recombinant plant virus-based nanoparticles (PVNs) provide platforms for the induction of humoral and cellular immune responses to genetically fused antigens from pathogenic viruses, bacteria, tumors, and toxins in man and animals. Here, we comprehensively review the developments of several recombinant PVNs as prophylactic and/or therapeutic vaccines for the prevention or treatment of several microbial diseases, pathologies, and toxin poisoning.
[Mh] Termos MeSH primário: Doença de Alzheimer/terapia
Vacinas Bacterianas/imunologia
Vacinas Antimaláricas/imunologia
Nanopartículas/química
Vacinas Virais/imunologia
Vírion/imunologia
[Mh] Termos MeSH secundário: Vírus do Mosaico da Alfafa/genética
Vírus do Mosaico da Alfafa/imunologia
Doença de Alzheimer/imunologia
Doença de Alzheimer/patologia
Animais
Antígenos/química
Antígenos/imunologia
Vacinas Bacterianas/administração & dosagem
Vacinas Bacterianas/química
Vacinas Bacterianas/genética
Comovirus/genética
Comovirus/imunologia
Cucumovirus/genética
Cucumovirus/imunologia
Epitopos/química
Epitopos/imunologia
Seres Humanos
Imunoterapia/métodos
Vacinas Antimaláricas/administração & dosagem
Vacinas Antimaláricas/química
Vacinas Antimaláricas/genética
Nanopartículas/administração & dosagem
Tombusviridae/genética
Tombusviridae/imunologia
Tombusvirus/genética
Tombusvirus/imunologia
Vacinas Virais/administração & dosagem
Vacinas Virais/química
Vacinas Virais/genética
Vírion/química
Vírion/genética
[Pt] Tipo de publicação:JOURNAL ARTICLE; REVIEW
[Nm] Nome de substância:
0 (Antigens); 0 (Bacterial Vaccines); 0 (Epitopes); 0 (Malaria Vaccines); 0 (Viral Vaccines)
[Em] Mês de entrada:1711
[Cu] Atualização por classe:171106
[Lr] Data última revisão:
171106
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170426
[St] Status:MEDLINE
[do] DOI:10.2174/1389203718666170424153109


  7 / 185 MEDLINE  
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[PMID]:28155196
[Au] Autor:Grasse W; Spring O
[Ad] Endereço:Institute of Botany, University of Hohenheim, Garbenstr. 30, 70599, Stuttgart, Germany.
[Ti] Título:ssRNA viruses from biotrophic Oomycetes form a new phylogenetic group between Nodaviridae and Tombusviridae.
[So] Source:Arch Virol;162(5):1319-1324, 2017 May.
[Is] ISSN:1432-8798
[Cp] País de publicação:Austria
[La] Idioma:eng
[Ab] Resumo:Plasmopara halstedii virus (PhV) is one of the few characterized oomycete viruses. Although it is fully sequenced and well-studied in its genetic diversity, the exact classification and phylogenetic relationships of PhV remain uncertain. The only known virus with characteristics similar to PhV is the Sclerophthora macrospora Virus A (SmV-A). Both viruses infect obligate biotrophic oomycetes. While RNA-dependent RNA polymerases (RdRp) of oomycetes viruses have high similarity to the corresponding enzymes from viruses classified in the family Nodaviridae, the coat proteins (CP) seem to be completely different from those of other viruses of this family. In contrast, the coat proteins of PhV and SmV-A have high similarity to viruses classified in the Tombusviridae, Circoviridae and a new group of hybrid DNA-RNA viruses (so-called chimeric viruses or cruciviruses). Because phylogenetic analyses based on the sequences of either RdRp or CP result in different affinities, an alternative, genome-based approach combining the sequences of both proteins was used. This analysis placed the two oomycete viruses together with Tombunodavirus UC1 in a new, independent group between families Nodaviridae and Tombusviridae.
[Mh] Termos MeSH primário: Proteínas do Capsídeo/genética
Genoma Viral/genética
Nodaviridae/genética
Oomicetos/virologia
RNA Replicase/genética
RNA Viral/genética
Tombusviridae/genética
[Mh] Termos MeSH secundário: Sequência de Aminoácidos
Sequência de Bases
Variação Genética
Nodaviridae/classificação
Alinhamento de Sequência
Análise de Sequência de RNA
Tombusviridae/classificação
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (Capsid Proteins); 0 (RNA, Viral); EC 2.7.7.48 (RNA Replicase)
[Em] Mês de entrada:1704
[Cu] Atualização por classe:170428
[Lr] Data última revisão:
170428
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170204
[St] Status:MEDLINE
[do] DOI:10.1007/s00705-017-3243-2


  8 / 185 MEDLINE  
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[PMID]:28148800
[Au] Autor:Newburn LR; White KA
[Ad] Endereço:Department of Biology, York University, Toronto, Ontario, Canada.
[Ti] Título:Atypical RNA Elements Modulate Translational Readthrough in Tobacco Necrosis Virus D.
[So] Source:J Virol;91(8), 2017 Apr 15.
[Is] ISSN:1098-5514
[Cp] País de publicação:United States
[La] Idioma:eng
[Ab] Resumo:Tobacco necrosis virus, strain D (TNV-D), is a positive-strand RNA virus in the genus and family The production of its RNA-dependent RNA polymerase, p82, is achieved by translational readthrough. This process is stimulated by an RNA structure that is positioned immediately downstream of the recoding site, termed the readthrough stem-loop (RTSL), and a sequence in the 3' untranslated region of the TNV-D genome, called the distal readthrough element (DRTE). Notably, a base pairing interaction between the RTSL and the DRTE, spanning ∼3,000 nucleotides, is required for enhancement of readthrough. Here, some of the structural features of the RTSL, as well as RNA sequences and structures that flank either the RTSL or DRTE, were investigated for their involvement in translational readthrough and virus infectivity. The results revealed that (i) the RTSL-DRTE interaction cannot be functionally replaced by stabilizing the RTSL structure, (ii) a novel tertiary RNA structure positioned just 3' to the RTSL is required for optimal translational readthrough and virus infectivity, and (iii) these same activities also rely on an RNA stem-loop located immediately upstream of the DRTE. Functional counterparts for the RTSL-proximal structure may also be present in other tombusvirids. The identification of additional distinct RNA structures that modulate readthrough suggests that regulation of this process by genomic features may be more complex than previously appreciated. Possible roles for these novel RNA elements are discussed. The analysis of factors that affect recoding events in viruses is leading to an ever more complex picture of this important process. In this study, two new atypical RNA elements were shown to contribute to efficient translational readthrough of the TNV-D polymerase and to mediate robust viral genome accumulation in infections. One of the structures, located close to the recoding site, could have functional equivalents in related genera, while the other structure, positioned 3' proximally in the viral genome, is likely limited to betanecroviruses. Irrespective of their prevalence, the identification of these novel RNA elements adds to the current repertoire of viral genome-based modulators of translational readthrough and provides a notable example of the complexity of regulation of this process.
[Mh] Termos MeSH primário: Biossíntese de Proteínas
RNA Replicase/biossíntese
RNA Mensageiro/genética
RNA Viral/genética
Tombusviridae/genética
[Mh] Termos MeSH secundário: Cucumis/virologia
Análise Mutacional de DNA
Conformação de Ácido Nucleico
RNA Replicase/genética
RNA Mensageiro/química
RNA Viral/química
Tombusviridae/enzimologia
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (RNA, Messenger); 0 (RNA, Viral); EC 2.7.7.48 (RNA Replicase)
[Em] Mês de entrada:1705
[Cu] Atualização por classe:170929
[Lr] Data última revisão:
170929
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170203
[St] Status:MEDLINE


  9 / 185 MEDLINE  
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[PMID]:28138775
[Au] Autor:McLaughlin M; Lockhart B; Jordan R; Denton G; Mollov D
[Ad] Endereço:USDA ARS, National Germplasm Resources Laboratory, Beltsville, MD, 20705, USA.
[Ti] Título:Complete nucleotide sequence of clematis chlorotic mottle virus, a new member of the family Tombusviridae.
[So] Source:Arch Virol;162(5):1373-1379, 2017 May.
[Is] ISSN:1432-8798
[Cp] País de publicação:Austria
[La] Idioma:eng
[Ab] Resumo:Clematis chlorotic mottle virus (ClCMV) is a previously undescribed virus associated with symptoms of yellow mottling and veining, chlorotic ring spots, line pattern mosaics, and flower distortion and discoloration on ornamental Clematis. The ClCMV genome is 3,880 nt in length with five open reading frames (ORFs) encoding a 27-kDa protein (ORF 1), an 87-kDa replicase protein (ORF 2), two centrally located movement proteins (ORF 3 and 4), and a 37-kDa capsid protein (ORF 5). Based on morphological, genomic, and phylogenetic analysis, ClCMV is predicted to be a member of the genus Pelarspovirus in the family Tombusviridae.
[Mh] Termos MeSH primário: Proteínas do Capsídeo/genética
Clematis/virologia
RNA Replicase/genética
Tombusviridae/classificação
Tombusviridae/genética
[Mh] Termos MeSH secundário: Sequência de Bases
Genoma Viral
Fases de Leitura Aberta/genética
Filogenia
RNA Viral/genética
Análise de Sequência de RNA
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (Capsid Proteins); 0 (RNA, Viral); EC 2.7.7.48 (RNA Replicase)
[Em] Mês de entrada:1704
[Cu] Atualização por classe:170428
[Lr] Data última revisão:
170428
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:170201
[St] Status:MEDLINE
[do] DOI:10.1007/s00705-017-3236-1


  10 / 185 MEDLINE  
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[PMID]:27995336
[Au] Autor:Tahir MN; Lockhart B; Grinstead S; Mollov D
[Ad] Endereço:USDA, ARS, National Germplasm Resources Laboratory, Beltsville, MD, 20705, USA.
[Ti] Título:Characterization and complete genome sequence of a panicovirus from Bermuda grass by high-throughput sequencing.
[So] Source:Arch Virol;162(4):1099-1102, 2017 Apr.
[Is] ISSN:1432-8798
[Cp] País de publicação:Austria
[La] Idioma:eng
[Ab] Resumo:Bermuda grass samples were examined by transmission electron microscopy and 28-30 nm spherical virus particles were observed. Total RNA from these plants was subjected to high-throughput sequencing (HTS). The nearly full genome sequence of a panicovirus was identified from one HTS scaffold. Sanger sequencing was used to confirm the HTS results and complete the genome sequence of 4404 nt. This virus was provisionally named Bermuda grass latent virus (BGLV). Its predicted open reading frames follow the typical arrangement of the genus Panicovirus. Based on sequence comparisons and phylogenetic analyses BGLV differs from other viruses and therefore taxonomically it is a new member of the genus Panicovirus, family Tombusviridae.
[Mh] Termos MeSH primário: Genoma Viral
Poaceae/virologia
Tombusviridae/genética
[Mh] Termos MeSH secundário: Sequência de Bases
Sequenciamento de Nucleotídeos em Larga Escala
Dados de Sequência Molecular
Fases de Leitura Aberta
Filogenia
Doenças das Plantas/virologia
RNA Viral
Tombusviridae/classificação
Tombusviridae/isolamento & purificação
Proteínas Virais/genética
[Pt] Tipo de publicação:JOURNAL ARTICLE
[Nm] Nome de substância:
0 (RNA, Viral); 0 (Viral Proteins)
[Em] Mês de entrada:1703
[Cu] Atualização por classe:170315
[Lr] Data última revisão:
170315
[Sb] Subgrupo de revista:IM
[Da] Data de entrada para processamento:161221
[St] Status:MEDLINE
[do] DOI:10.1007/s00705-016-3165-4



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