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[PMID]: | 28470244 |
[Au] Autor: | Chen X; Jiang ZC; Xie D; Huang DS; Zhao Q; Yan GY; You ZH |
[Ad] Endereço: | School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, 221116, China. xingchen@amss.ac.cn. |
[Ti] Título: | A novel computational model based on super-disease and miRNA for potential miRNA-disease association prediction. |
[So] Source: | Mol Biosyst;13(6):1202-1212, 2017 May 30. | [Is] ISSN: | 1742-2051 |
[Cp] País de publicação: | England |
[La] Idioma: | eng |
[Ab] Resumo: | In recent years, more and more studies have indicated that microRNAs (miRNAs) play critical roles in various complex human diseases and could be regarded as important biomarkers for cancer detection in early stages. Developing computational models to predict potential miRNA-disease associations has become a research hotspot for significant reduction of experimental time and cost. Considering the various disadvantages of previous computational models, we proposed a novel computational model based on super-disease and miRNA for potential miRNA-disease association prediction (SDMMDA) to predict potential miRNA-disease associations by integrating known associations, disease semantic similarity, miRNA functional similarity, and Gaussian interaction profile kernel similarity for diseases and miRNAs. SDMMDA could be applied to new diseases without any known associated miRNAs as well as new miRNAs without any known associated diseases. Due to the fact that there are very few known miRNA-disease associations and many associations are 'missing' in the known training dataset, we introduce the concepts of 'super-miRNA' and 'super-disease' to enhance the similarity measures of diseases and miRNAs. These super classes could help in including the missing associations and improving prediction accuracy. As a result, SDMMDA achieved reliable performance with AUCs of 0.9032, 0.8323, and 0.8970 in global leave-one-out cross validation, local leave-one-out cross validation, and 5-fold cross validation, respectively. In addition, esophageal neoplasms, breast neoplasms, and prostate neoplasms were taken as independent case studies, where 46, 43 and 48 out of the top 50 predicted miRNAs were successfully confirmed by recent experimental literature. It is anticipated that SDMMDA would be an important biological resource for experimental guidance. |
[Mh] Termos MeSH primário: |
Biologia Computacional/métodos Simulação por Computador MicroRNAs/genética
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[Mh] Termos MeSH secundário: |
Algoritmos Estudos de Associação Genética Predisposição Genética para Doença/genética
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[Pt] Tipo de publicação: | JOURNAL ARTICLE |
[Nm] Nome de substância:
| 0 (MicroRNAs) |
[Em] Mês de entrada: | 1803 |
[Cu] Atualização por classe: | 180309 |
[Lr] Data última revisão:
| 180309 |
[Sb] Subgrupo de revista: | IM |
[Da] Data de entrada para processamento: | 170505 |
[St] Status: | MEDLINE |
[do] DOI: | 10.1039/c6mb00853d |
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